0:00 MD Intro
2:14 SNES Comic 1
4:44 Detroit Streets
6:30 SNES Comic 2
9:16 ED-209
10:14 Delta City
13:58 Toxic Farm (MD)
16:16 OCP
21:40 SNES Comic 3
24:16 Terminator Outpost
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27:24 Hunter-Killer (SN)
28:52 Flight To Skynet (SN)
30:20 Underground Complex (MD) & Outer Perimeter (SN)
32:40 Skynet Main Tower (SN)
33:48 Secret Remote Base (MD)
37:00 Storage Facility (SN)
41:06 Underground Bunker (MD) & Second Storage Facility (SN)
44:16 Hovering Sentry (SN)
46:12 The Wall to Skynet (MD)
47:44 Skynet Inner Complex (SN)
52:06 Skynet (both)
56:52 Self-Destruct Sequence (SNES only)
59:14 Ending & Credits (both)
1:02:34 Tribute
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The two versions side by side - the SNES is a full playthrough but some MD stages are edited (levels 1,2, 4, 5, 10). Also, the MD uses the "real version" cheat (pause and press C, B, A, B, B, A, B, B, C, B, B, C, C, B, B, C, B, C, A, C, C, A, A, A, B, B, B, A, C, A)
MD is 320x224 and SNES is 256x224
(doubled at 640x448 and 512x448)
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Other MD & SNES comparisons:
Captain America and the Avengers: http://youtu.be/_Y5JF0GhIAk
Last Action Hero: http://youtu.be/MQ0Fv9hBoQ4
Mickey Mania: http://youtu.be/qUsJBnBoyCg
Mortal Kombat: http://youtu.be/798fkJEECSY
The Lion King: http://youtu.be/7vGAA26GWQU
RoboCop 3: http://youtu.be/7WhqyJV-MMM
LINKS
Sega-16 comparison: http://www.sega-16.com/forum/showthread.php?19078-Genesis-vs-SNES-Game-by-game-comparisons-repost-of-lost-thread&p=414340&viewfull=1#post414340